I am about half way through my current game of BTS and when I call up the Military Advisor I have noticed that not all of my units are listed. The deployment report is missing 1 galleon and 1 caravel. I have tried searching the forum to find if this is a known issue or if maybe it may be my installation.

Could any one let me know if this is something that is happening to others as well?

I am playing with the official patch 3.13, unofficial patch, and the BUG project 2.30.

Yes, this is a known issue that I am working on.