Well there would be only pair of autobuildings: They would require palace to function, effectively locking them in capital. Education powered Competence level would be at same level in every city, but only in Capital it could actually do something. Competence autobuildings would boost/dampen yields of civics. Same with crime powered transparency - autobuildings would be only in capital, as they would require palace. Transparency would affect happines/unhappines and health/unhealth coming from civics. Health/happines from civics is easily swamped by resource/building health/happines modifiers anyway - in fact it wouldn't make much difference, if civics didn't have health/happiness bonus past prehistoric era.