The patch that doesn't work (at least not for me) with 1.09b is this one:
http://www.firaxis.com/downloads/Patch/ColonizationPatch1.01f.exe
Right now the ONLY 1.01f patch that I am using is the one that is included in AoDII 1.09b. You would have to ask Dale which patch that is. My difficulties arose from patching vanilla to 1.01f and then adding AoDII 1.09b.
http://www.firaxis.com/downloads/Patch/ColonizationPatch1.01f.exe
Right now the ONLY 1.01f patch that I am using is the one that is included in AoDII 1.09b. You would have to ask Dale which patch that is. My difficulties arose from patching vanilla to 1.01f and then adding AoDII 1.09b.