Yes indeed. After a very careful experiment (namely starting a new game, saving and reloading immediately and seeing mods disappear, playing one turn then repeating) that is what I saw. That said, I might have been hallucinating so I'll repeat the experiment tonight.
One theory I heard on a thread about the lost mods bug is that the value of "affects saved games" flag in the mods that are disappearing might be involved.
Also, I finally go around to moving my good graphics card to the otherwise-better new rig, and that made a heck of a lot of the graphical glitches go away. I'm pretty sure there were some race conditions and/or deadlocks in their graphics code, that only show up on lower-end cards. I'll see if that also made the unit panel problem go away.