That's the direction I was expecting when I posted my first reply. The question I have now is this: Will I lose anything if I instead remove the "CityView" folder and "TopPanel.lua" from your mod? I went ahead and tried doing this because I didn't see a difference in the UI with your mod enabled/in the OP. Everything seems to be working as of now. I tested it by going back to my autosave and founding my city again with the aforementioned changes.
edit: nvm i don't have the notification panel(idk what to call it(the thing underneath the uppermost top panel that includes things such as diplomacy and world congress)) and I don't have the beautiful civ ribbon. Perhaps it's because I did something that i'm missing, idk. I'll try messing around with it and i'll try what you recommended.
edit2: Sorry for a long post =l. I've gotten the above problems to go away. At this point i've removed CityView,TopPanel.lua,the Popups folder, and the CustomNotification folder. I'm expecting this to have at least one(probably more)effect on the mod. The reason I've removed the CustomNotification folder was because of the "NotificationPanel.lua and .xml files inside of it. I figured that this was the panel that I mentioned in my first edit. If you've gotten this far,thanks for reading through my rambling
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I would very much appreciate an explanation of what the folders do and which ones are safe to disable for the compatibility of EUI. I've disabled the UnitPanel but I'd like to be able to play with the CityView intact.