Dale, I'm running into a problem with the WOI while playing AOD2, and I'm not sure of the problem lies in the mod or in the underlying C4C 1.01, but it's annoying as hell. Actually two problems, but one of them only makes the WOI too easy -- or it would, except for the other problem, which makes it almost impossible.
First of all, the Royal Navy sits there adjacent to my fortresses, which blast away at their ships and end up sinking a number of them, drowning lots of REF troops. At least I think that's what's happening, because I'll check the Revolution Advisor the next turn and see the REF down to maybe a third to half of what it started as, when I've hardly killed any of them. That's kind of silly, don't you think? I'm not sure what the solution is; maybe make it impossible for fortress guns to actually sink ships? Just damage them, at which point you can hit them with your own SOTL.
But the other problem. After the REF is down to just a few units, it disappears. The Rev. advisor tells me they have only a few more units left, but they're somewhere in the New World, God knows where, and I have to go hunt them down. I've found actual settlements built by REF units, where a Regular or a Dragoon has been turned into a colony. I've found them in small groups attacking an Indian tribe that I had a DP with and that declared war on the King after the WOI started. (That could be resolved by counting the DOI as me declaring war on the King rather than vice-versa, so the DP isn't invoked.) It's just a horrid pain to have to go searching the world for those last few units, and every time I've declared independence and mostly clobbered the REF, I've given up and left the game once it reaches this stage.