Are you saying that all RA's should be paid in gpt, as opposed to full price up front?
Yes, this was what I had in mind.
I'm playing GotM 2 now, and am in the late industrial era. I had 3 RAs expire on the same turn, and the science bonus from them gave me about an entire late-industrial tech. The science screen says they're ~5000 beakers each (I'm also in a rather massive tech lead).
That means each RA was worth ~ 1500 beakers as "small bonus in the end". My total science production is roughly 500 per turn.
Looking at the math, I'm currently getting 48 beakers per turn from 4 RAs, so ~12 each. That means a RA is worth a total of ~ 400 beakers in beakers per turn. I do have the Porcelain Tower.
While the numbers are estimates, the conclusion in orders of magnitude seem obvious. The value of a RA is about tripled or quadrupled by the "unknown, small bonus in the end". Thus the mechanism is all but broken, RAs are hugely powerful. And in this game RAs seem to leverage me to a runaway tech lead.
One idea that had come to mind: If the Porcelain Tower gives +25% to RA bonuses, and you've set RAs to give 0 on completion by having the palace give -100%, then could PT mean the owner gets 25% of the vanilla RA returns on top of the beakers per turn? That could explain why 3 RAs in the industrial era gave about one tech.