I don't think there is much to be done about the frame skip, although it does sound somewhat worse in your case than I've experienced myself.
Have you tried rolling back to an older graphic driver, or perhaps make sure you have the latest version?
I have the latest version, haven't tried rolling back yet. I need to test it on my other PC and virtual PC first to be "almost" sure what is causing it. But I'm pretty sure it'll work flawless on virtual PC with Windows XP installed, gonna install my old Win XP 64Bit version on it. It will be enough for me if it does, I can play the mod on that. Cannot play (but I can test) it on my other PC because it only has 2GB RAM at the moment, so hoping it works OK on virtual PC.
Two last options if none of above gives me a plain answer would be
either overclocking RAM just to test
or re-install Win7 but I'm not gonna do that
I've encountered many problems with PCs, for 99% of those problems I've found a solution. I like figuring out these kinds of problems haha, there has been only 1 case I haven't figured out, that was hardware related on my friend's PC (I guessed he had some problems with RAM-CPU interaction on the motherboard but he never sent the motherboard to the manufacturer to confirm it. So it will remain a mystery). This Civ thing might be the second but I won't give up unless I've tried everything