Hi agaro!
First of all, welcome to team!
A new system, when you can load in one wagon many goods is much better for authomatic transportation.
Now your Land transport unit (wagon) can transport only 2 type of goods because each wagon has only 2 slots. It means that you have to use 2 wagons if you need transport 3 or 4 various goods from city 1 to city 2. Or to create more complex algorithm for transportation when during the first run you transport goods 1 and 2, during run 2 - goods 3 and 4. The game perfectly understunds both variants.
Now, let's image, we have a new system, when you can load in your wagon all goods requied for transportation. One wagon will be enough to transport all goods in 1 run. Why the problems could appear for AI to understand this new algorithm?
Please, try "1492: Gold Rush" mod, where exactly such system is developped for Warehouse capacity. AI understands it perfectly.
I will try 1492, but first a bit of clarification.
The human player can use 3 types of wagons:
- manually loaded wagons,
- assigned trade route wagons (restricted to some cargos and some cities),
- fully automated wagons (can take any cargo to any city - as long as cities set up to export / import of course).
As far as I am aware the AI player will always use fully automated wagons only.
My recommendation is that short-route, single-stage, multi-good shuttle wagons are most efficient. See this
http://forums.civfanatics.com/showthread.php?t=382590
Under the new multiple goods in slot approach...
For manually loaded wagons: Human can load whatever they want to 200kgs, so will need less wagons. Good for them.
For Assigned wagons: These currently select cargos based on biggest economic value (size x unit value). So if they were to combine loads in one slot it would probably still be better to carry the max combined value, rather than max combined weight. But again these wagons would benefit from being able to carry multiple loads at once - again good for human.
For Fully Automated wagons: Fully automated wagons are more tricky to use efficiently because they can go to any city they like, they tend to travel empty some of the time, and they compete rather than cooperate - i.e. more than one wagon will try to do the same move order. Again these benefit from carrying multiple loads - but perhaps not as much as assigned wagons. You will get some very full efficient trips, but perhaps more empty slots also. You will probably use less wagons, but this will mean longer wait times.
Anyway I will try 1492 and then comment more.