I often get "our scientific research is progressing well due to generous funding!" but it is because I play on lower levels and can afford to put my science up way high.
In fact, ignore all of the advisors (except the military advisor, he tells you your strength compared to other civs) in the upper-right hand corners. What they say means nothing.
For example, I had a size 32 city (Nineveh) that was still growing every like 2 or 3 turns due to an enormous flood plain surrounding the city, and I clicked on the city in the Domestic Advisor screen and it said "Nineveh is growing slowly, sir." I'm like, "WTH are you smoking?" The Domestic Advisor always say the cities are growing slowly, the Trade Advisor always says you need more resources, and the Cultural Advisor always says you need more culture of some sort (I rarely ever go to the Cultural Advisor), and some other things.