AGP no question. AGP is basically PCI for graphics. I don't undertand why this is even a question, the latency and bandwidth is so much better (now comparing 32-bit PCI used for consumer graphics, not 64-bit PCI and PCI-X for workstations).
OTOH, the difference is rather small in very low performance cards for which the rendering itself is the bottleneck.
Well there's three now:
PCI - Old
AGP - Current, but quickly becoming outdated by PCI-E
PCI-E - New, but quickly becoming standard
In a nutshell: (more x is better)
PCI - 1x; standard on all mainstream PC's
AGP - 4x/8x; should be on almost all 1-2 year old PC's (unless they have IGP)
PCI-E - 16x; side by side slots allow for dual cards which most AGP set ups do not; um, I know it's been on the newer boards since last year, but I think the 'performance' PC's are just now starting to use it.
And as always there is also IGP; which is integrated graphics; which is bad, bad, bad; but seems to be everywhere; and worse, the only way to upgrade is usually with PCI (1x); UGH!
There is no real performance gain between a top-end AGP or PCI-e card at the moment. If you are investing in a new mobo, then get one with a PCI-e slot.
That's not true, actually. Granted, they don't release all the new models for PCIe, and the ones that do are usually a little later on for AGP, but there are high end cards released for AGP. If you're looking for something that can handle just about any gaming demands on a budget in an AGP slot, this is worth considering: http://www.newegg.com/Product/Product.asp?Item=N82E16814130220
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