Actually, I began to work on it again today. I've been so busy the last few weeks it's ridiculous.
Today I found a useful little program called MapViewer (now it works as an editor to)
I loaded up the map I made in it to see how it came out (since I wasn't able to view it in CivIV because of the problems) and I am truely amazed how accurate python used it's algorithims to make that.
The map, I kid you not, looks exactly like Algaesia. I'm working right now to find all problems and fix them. SOrry it took me so long.