Help me understand Punctuated Equilibrium

theskald

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My confusion about the theory comes out of hearing what Richard Dawkins has to say about it and Eldridge/Gould. I think the man's an annoying blowhard most of the time, but I'll listen when he has something to say about evolutionary biology, and this quote from him makes me think I didn't understand PE at all:

Dicky D from "The Blind Watchmaker" said:
"They believe that evolution generally proceeds in bursts, or not at all. "Continuously variable speedists," on the other hand believe that "evolutionary rates fluctuate continuously from very fast to very slow and stop, with all intermediates. They see no particular reason to emphasize certain speeds more than others. In particular, stasis, to them, is just an extreme case of ultra-slow evolution."

Is he misrepresenting the theory here or is this really what it postulates? If so I guess I'm one of Dawkins's "Continuously variable speedists." However, I'm skeptical of this as I always thought PE was specifically about speciation. Can anyone clear this up for me?
 
Summary: He says that on the molecular level th speed is probably relatively constant and much faster than anyone would naively expect. However, since the mapping from DNA bases to amino acids, the mapping from amino acids to protein geometry, and the mapping from protein geometry to phenotypic properties are all many-to-one mappings, the massive but relatively constant mutation rate on the molecular level can lead to a very wide range of mutation rate in the phenotypic level, from the relatively negligible to the astoundingly fast.
 
My confusion about the theory comes out of hearing what Richard Dawkins has to say about it and Eldridge/Gould. I think the man's an annoying blowhard most of the time, but I'll listen when he has something to say about evolutionary biology, and this quote from him makes me think I didn't understand PE at all:



Is he misrepresenting the theory here or is this really what it postulates? If so I guess I'm one of Dawkins's "Continuously variable speedists." However, I'm skeptical of this as I always thought PE was specifically about speciation. Can anyone clear this up for me?

I take issue with the idea of an evolutionary "speed". Mutations occur at a generally constant rate, regardless of the phenotypic effect. What happens in punctuated equilibrium is that a very rare mutation (or series of sequential mutations -- see the recent paper on citrate metabolism in E. coli) gives a large selective advantage to an individual. Evolution appears to "speed up" because selection is so strong towards the new phenotype, but the underlying mutations are still occurring at the same speed.

[edit] Basically what nihilistic said. Missed it by a minute :(.
 
yeah but mutations dont' always lead to a change in a species (if it's not a beneficial mutation, the mutated individual has a lower chance of suvviving and passing on the mutation) - and evolution usually means a change in a species.. right?

so when you say "speed of eovlution" you're usually referring to how fast a species is changing over time, no matter the fact that mutations happen at the same rate (ie. one per generation)
 
Evolutionary biologists don't usually think of evolution in terms of speciation. The term "species" is so loosely defined that it's hardly useful in anything but colloquial use. Evolution is simply genetic change over successive generations. Those genetic changes might have no apparent affect, or they might have very profound effects, but it's all the same at the molecular level. Since mutations happen at a generally constant rate, evolution by its technical definition also happens at a constant rate. Punctuated evolution is hard to show because we only have the fossil record to fall back on. It tells us a lot, but you can have huge variation between individuals of a "species" that isn't captured in the bones. Personally I don't think it's a very good model because it anthropomorphizes evolution too much.
 
Summary: He says that on the molecular level th speed is probably relatively constant and much faster than anyone would naively expect. However, since the mapping from DNA bases to amino acids, the mapping from amino acids to protein geometry, and the mapping from protein geometry to phenotypic properties are all many-to-one mappings, the massive but relatively constant mutation rate on the molecular level can lead to a very wide range of mutation rate in the phenotypic level, from the relatively negligible to the astoundingly fast.

I should have read that before starting to watch it. I loved his kitschy shirt, though :lol: Honestly, though, that doesn't really clarify the issue for me, just Dawkins's view. I'm still not sure he's presenting PE as it was presented, and I'm not sure Eldridge/Gould lacked an understanding for the chemical processes behind evolution when they proposed their theory--Did they?

I take issue with the idea of an evolutionary "speed". Mutations occur at a generally constant rate, regardless of the phenotypic effect. What happens in punctuated equilibrium is that a very rare mutation (or series of sequential mutations -- see the recent paper on citrate metabolism in E. coli) gives a large selective advantage to an individual. Evolution appears to "speed up" because selection is so strong towards the new phenotype, but the underlying mutations are still occurring at the same speed.

Yeah, exactly, and I didn't think that's what PE described. Variation doesn't stop, I was under the impression that PE suggested that under certain conditions a population can dramatically "change" rather quickly, or rather their environment can select for a trait (perhaps from a mutation as dramatic as frame shift) bringing about changes very quickly, say bony fins and maybe elbows ;)

I thought PE was just a theory to explain "explosions" in speciation following some event wiping out the dominant life forms.

Me too, man!

yeah but mutations dont' always lead to a change in a species (if it's not a beneficial mutation, the mutated individual has a lower chance of suvviving and passing on the mutation) - and evolution usually means a change in a species.. right?

so when you say "speed of eovlution" you're usually referring to how fast a species is changing over time, no matter the fact that mutations happen at the same rate (ie. one per generation)

Yeah, that's a much better way of putting it than what I wrote above.

Evolutionary biologists don't usually think of evolution in terms of speciation. The term "species" is so loosely defined that it's hardly useful in anything but colloquial use.

Then I'll use more precise language: A certain, identifiably unique, new trait (we're talking on an organism level, I don't think I could accept the suggestion that the traits of the whole organism are irrelevant just because of a constant rate of mutation at the cellular level) that provides an advantage to the survival of the changed species.

Dawkins put it well in the video Nihilistic posted, just got to this part. Speaking of punctuated equilibrium: "[...] Even very slight selection pressures could give rise to evolutionary change so rapid that it would be indistinguishable from instantaneous on the fossil record." Dawkins went on to say "[...] Sometimes evolution goes so rapidly that it doesn't show on the fossil record, particularly when it happens in another place, as it so often does." Does this sound accurate? Is PE more about accounting for what seems like sudden change or gaps in the fossil record?
 
Yeah, exactly, and I didn't think that's what PE described. Variation doesn't stop, I was under the impression that PE suggested that under certain conditions a population can dramatically "change" rather quickly, or rather their environment can select for a trait (perhaps from a mutation as dramatic as frame shift) bringing about changes very quickly, say bony fins and maybe elbows

This is part of the theory. Recent work with chaperones has justified it a great deal. The thing is, chaperones are a 'redundant' function in the non-stressful times (kinda) and so they can mask mutations by forcing the phenotype to remain the same. In a new environment, though, a whole series of phenotypes can be 'unmasked' by the stress (the majority of them being deleterious) resulting in quick changes.

You know the signature you've seen, where all the words are strange? "Sutdies hvae sowhn taht we udernstnad txet" blah blah blah? The meaning of the text stay the same, even though the words have been misspelled. But if you run the text through a spell checker, the text meaning fundamentally changes? It's a bit like that.
 
Dawkins put it well in the video Nihilistic posted, just got to this part. Speaking of punctuated equilibrium: "[...] Even very slight selection pressures could give rise to evolutionary change so rapid that it would be indistinguishable from instantaneous on the fossil record." Dawkins went on to say "[...] Sometimes evolution goes so rapidly that it doesn't show on the fossil record, particularly when it happens in another place, as it so often does." Does this sound accurate? Is PE more about accounting for what seems like sudden change or gaps in the fossil record?

To me, PE is merely the observation that the fossil record appears to show sudden bursts of phenotypic change. Other biologists take it farther than that, but what Dawkins says sounds accurate enough.

Food for thought: A mutation that confers a 1% reproductive advantage (101 offspring instead of 100) can become fixed in a population (ie, become the dominant trait) in as few as 3000 generations. If the organism in question reaches sexual maturity in 3 years, the new trait can become fixed in less than 10000 years. This is what Dawkins is referring to. When you're on time scales of several millions of years, 10000 years is just an instant in time.
 
This is part of the theory. Recent work with chaperones has justified it a great deal. The thing is, chaperones are a 'redundant' function in the non-stressful times (kinda) and so they can mask mutations by forcing the phenotype to remain the same. In a new environment, though, a whole series of phenotypes can be 'unmasked' by the stress (the majority of them being deleterious) resulting in quick changes.

You know the signature you've seen, where all the words are strange? "Sutdies hvae sowhn taht we udernstnad txet" blah blah blah? The meaning of the text stay the same, even though the words have been misspelled. But if you run the text through a spell checker, the text meaning fundamentally changes? It's a bit like that.

I knew of chaperones, but I wasn't aware they behave like that, that's really fascinating information.

To me, PE is merely the observation that the fossil record appears to show sudden bursts of phenotypic change. Other biologists take it farther than that, but what Dawkins says sounds accurate enough.

Food for thought: A mutation that confers a 1% reproductive advantage (101 offspring instead of 100) can become fixed in a population (ie, become the dominant trait) in as few as 3000 generations. If the organism in question reaches sexual maturity in 3 years, the new trait can become fixed in less than 10000 years. This is what Dawkins is referring to. When you're on time scales of several millions of years, 10000 years is just an instant in time.

That's what I thought, maybe this is a matter of my misunderstanding the quote or maybe it was too out of context, but it sounded like he was rebuking the very scientists that proposed the theory. Further, I know the meaning of "instant" in paleontological terms, but that vast majority of people don't, which makes me think more careful language is in order.

I think that's cleared this up for me, thanks guys.
 
Well, Dawkins is a big ass. Chances are he was rebuking them, because he's an ass. The Dawkins/Gould battle is pretty famous.
 
Well, Dawkins is a big ass. Chances are he was rebuking them, because he's an ass. The Dawkins/Gould battle is pretty famous.

Hah hah, I agree with you wholeheartedly. I didn't know he was also an ass to people in his own field.
 
Hah hah, I agree with you wholeheartedly. I didn't know he was also an ass to people in his own field.

I'm not int eh field, but if I were to guess El Machinae's sentiment probably had more to do with his political views about religion. See:

He's not really an academic when it comes to religion, though. He's mostly just a jerk.

Dawkins probably would have said that El Machinae belongs to the "Neville Chamberlain" school of biologists.
 
Like I said, I tend to listen to him when he has something to say about evolutionary biology, but Dawkins really does go beyond snarky and right into "I want people to punch me in the face" territory. It's not his message, necessarily, it's how he delivers it. Maybe he and I are just fundamentally incompatible, I don't know.

:lol: at Chamberlain joke.
 
Like I said, I tend to listen to him when he has something to say about evolutionary biology, but Dawkins really does go beyond snarky and right into "I want people to punch me in the face" territory. It's not his message, necessarily, it's how he delivers it. Maybe he and I are just fundamentally incompatible, I don't know.

:lol: at Chamberlain joke.

Well, there really isn't a non-insulting way to say to someone "doyou realize that you've essentially been living a lie all your life?", and many religious people are experts at painting themselves as "insulted" with the least of provocations.

To be fair though, I'm much closer to Dawkins on the topic of religion, and I don't mind being thought of as a jerk at all.
 
He can't say it in a non-insulting way so he has to turn it all the way up :confused: I prefer Neil Degrasse Tyson, if I had to pick a prominent scientist. At least he's cuddly and has a nice mustache :love:
 
He can't say it in a non-insulting way so he has to turn it all the way up :confused: I prefer Neil Degrasse Tyson, if I had to pick a prominent scientist. At least he's cuddly and has a nice mustache :love:

I don't see how he has tuned it "way up". All he says is that the reasons for supporting the religious hypothesis are all spectacularly bad. If you want to see any real militancy, you probably have to go read Hitchens.

And Tyson's views aren't that far from Dawkin's either.
 
I don't see how he has tuned it "way up". All he says is that the reasons for supporting the religious hypothesis are all spectacularly bad. If you want to see any real militancy, you probably have to go read Hitchens.

And Tyson's views aren't that far from Dawkin's either.

I feel like I should clear up my position here. I agree with him on many points, I'm not religious, I just don't like him very much for his personality, not his views. I guess that's all I really have to say.
 
I'm not int eh field, but if I were to guess El Machinae's sentiment probably had more to do with his political views about religion

Not completely! He's a big jerk in his own field, too. There's a reason why the Gould/Dawkin fight is so famous. Dawkins was really mean. He knows his stuff, but he's not afraid of calling something stupid if he thinks it's stupid.
 
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