Regarding "Woods": ah, now I see what you mean... (I thought you were talking about the terrain type, like "Grassland", "Hill", "Forrest"...) So we should probably start a little test game with Spain and double-check that! I remember in the test game I played back in 2010 (as England), I met lots of Spanish ships..., so Spain should be able to build them. But that was the original version of the scenario, before many people did all those changes and fixes, so it could well be that the Woods ressource got deleted by accident.
Regarding Victory Conditions: I was also very suprised when I noticed that the scenario has the "Spaceship Victory" enabled, so I looked into that in a bit more detail: the scenario designer has changed this quite a bit as follows: instead of "spaceship parts", there are "famous treasures" that can be built by the Pirate nations. Like "Blackbeard's Treasure", "Capt'n Morgan's Treasure", etc. There are 12 of them (replacing the standard "spaceship parts" of the unmodified game, plus two more). But they are really expensive (like 1000 shields each, if I remember correctly). The Pirate nation that first builds 5 of them, achieves the "Treasure Victory".
Haven't tested, whether this really works as intented. But as this is going to be a fun game, I would leave it in. We'll find out more about it as we go...
Regarding move order: as the game host, just put yourself in the first spot, Eclipse. Otherwise the game setup will become a bit complicated, if I remember correctly. The move order should not really be important for this game.