Thank you for the infos. I haven't been able to play with ToT a lot so far, but I noticed three fairly annoying issues.
1) The unit you have selected no longer blinks; instead, the yellowish rectangle-thingy beneath him does. I find this an offense to all mankind. How do I revert to the blinking ways of days past?
2) Similarly, even though I've disabled all animations (by deleting the associated files), there's still a delay when a unit moves from one square to another. How do I disable this and make units move instantly again?
3) The units are slightly elongated in the original graphics mod, making them appear goofy. I suppose it can't be helped..? It's an issue with the image sizes as I understand it; in MGE the unit icons are 4x x 4x (can't remember the exact number), while in ToT it's 6x x 4x. If this can't be helped, it is a *major* negative point to using ToT.
EDIT: Ah -- it seems that something's gone awry in a big way. I installed the 'original menus' mod by Catfish, and then when I loaded up a saved game, this happened:
Seems like I've entered Bizarro World accidentally.

Your mod was also in use when I saved and loaded the game; could it have conflicted with the UI mod somehow? Whatever this is, it seems to have totally mangled the terrain graphics... All those Game resources in one big cluster like that!

I just checked and they don't actually exist, being mere graphical artefacts. And the black city names and random resource tags on the terrain... Made my day, this bug, whatever it is!
EDIT2: If I start a new game and then try to load the saved game, Civ II stops working. If I pick 'Load Game' straight from the start-up menu, then I get the scrambled graphics. I hope the issue is with the UI mod and not your mod, because without your mod I can't found any cities (it will crash the game). I didn't keep the original menu files though... Bleh. I guess I should re-install the game and try again. I'm tempted to just stick with MGE though. In a way, working around its limitations was fun, even if frustrating at times. It may be just a first impression, but ToT seems cluttered and unnecessary next to MGE's spare elegance. I'm sure if I learned all the modding possibilities, I'd think differently, though.