Either automated workers set to not chop forests will also not chop jungles, or automated workers avoid improving resourceless jungle tiles because they prioritize improving resources over improvements they can build quickly over improvements they can only build slowly, such as improvement that require chopping a jungle.
Manually managing your workers would be better, of course.
Auto works set to not clear forests will still clear jungle in vanilla. No guarantees on the quality of their priority, as is the case for auto workers in general.
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