It's possible that they genetically engineer themselves into having 200+ IQ or develop strong AI or whatever. I only mean they not necessary have to be god-like creatures so that we are like ants comparing to them. Native Americans comparing to European colonists sounds more likely.
Fully agree that it is not necessary.
And in the clashes to come not even likely that the alien natives will see them. Just like the European colonists clashing with the native Americans were ordinary, mostly low educated lower class, people
And the ruling class, certainly the operational part, in whatever political or power system will I guess be quite normal.
Perhaps some social IQ tinkering if heritage or upper class cast systems are in place.
But it sounds as almost inevitable to happen that these specialised brain pets are developed.
And I guess, I am afraid, not really god-like.
More modern versions of Vulcanus than Zeus.
Dune describes an I think effective way to separate these freak specialists from the bulk of society:
The Guild Navigators were addicted to spice and could only live in their tanks.
EDIT
and thinking that concept of separation through.
In Dune the Sardaukar are the privileged enforcers of the imperial throne, but also completely separated from the people because of their raising on their home planet. Generating a max in-group Code and loyalty to the throne.
Sardaukar were trained from infancy on the atomics-devastated world of Salusa Secundus. Salusa was supposedly a prison-planet, but was also home to their secret military training facility. Here they underwent the most brutal and rigorous training schemes imaginable, whilst they simultaneously struggled to stay alive on Salusa's devastated surface. Only six out of thirteen individuals were said to survive past the age of eleven, and those that did began to show traits of cruelty and soullessness. This training paralleled that of Spartan Warriors, who were indoctrinated cruelly in order give them a sense of "unit", an "edge" and a mythos that defeated their enemies before battle was even enjoined. Chances are that Sociopathic personal traits were cultivated in order to build "soulless killers" who obeyed orders without question but who were still dependent upon "Chain of Command".
After all
Social cohesion of a people as a whole is always dangerous to an elite state.
The only social cohesion you want as an elite state is within the groups you fully control and keep separated from each other and the masses.
The masses need to be kept at the minimal lowest sustainable level of social cohesion.
High enough at family scale and absent at the granular levels of governing.
Only competitive chaufinism allowed to a low level degree as safety valve and monitoring window. Sports being perfect.