Newsworthy Science

The genetics of the origin of farming

Sometime before 12,000 years ago, nomadic hunter-gatherers in the Middle East made one of the most important transitions in human history: they began staying put and took to farming.

A pair of ancient-DNA studies — including one of the largest assemblages of ancient human genomes yet published — has homed in on the identity of the hunter-gatherers who settled down. A third, currently only a pre-print, agrees.

Excoffier’s team found that ancient Anatolian farmers descended from repeated mixing between distinct hunter-gather groups from Europe and the Middle East. These groups first split around the height of the last Ice Age, some 25,000 years ago. Modelling suggests that the western hunter-gatherer groups nearly died out, before rebounding as the climate warmed.

Once established in Anatolia, Excoffier’s team found, early farming populations moved west into Europe in a stepping-stone-like fashion, beginning around 8,000 years ago. They mixed occasionally — but not extensively — with local hunter-gatherers. “It’s really the spread of people, of farming communities, that brought farming further west,” says Excoffier.
The genomic origins of the world’s first farmers

Genomic insights into the origin of farming in the ancient Near East

Population Genomics of Stone Age Eurasia (pre-print)

Nature write up
 
Pollution kills 9 million people a year

One in six deaths worldwide in 2019 was related to pollution. Almost all of these — 90% — occur in low- and middle-income countries. The good news is that deaths attributable to the types of pollution associated with extreme poverty — such as poor sanitation and household air pollution caused by burning fuel indoors — are dropping. But newer forms, including particles from burning fossil fuels and lead from shoddy recycling of batteries and electronic waste, are on the rise. So, overall, the situation has not improved since 2015. “The number of global early deaths from exposure to pollution doesn’t surprise me,” says atmospheric scientist Eloise Marais. “What’s most concerning is the lack of adoption of measures to address the issue”.
1-s2.0-S2542519622000900-gr5.jpg

Lost economic output as a proportion of country GDP due to deaths from modern and traditional pollution in 2000 and 2019
Paper New Scientist Writeup

Spoiler More pics :
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Global estimated deaths by major risk factor or cause
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Downward trend in mortality rate from traditional pollution in Africa, 2000–19
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Upward trend in mortality from modern pollution in south Asia and southeast Asia, 2000–19
 
The team developed a low-cost gel film made of abundant materials that can pull water from the air in even the driest climates. The materials that facilitate this reaction cost a mere $2 per kilogram, and a single kilogram can produce more than 6 liters of water per day in areas with less than 15% relative humidity and 13 liters in areas with up to 30% relative humidity.

https://phys.org/news/2022-05-low-cost-gel-pluck-air.html
 
https://www.science.org/content/article/why-yawns-are-contagious-all-kinds-animals a quick interview with a guy who studies yawning in animals.
Was an interesting read, and had to laugh:
Q: You read, write, and think about yawns all day. Are you yawning all the time as a result?
A: When I first started studying this subject, I was yawning excessively. I was reading the literature and writing notes and writing papers, and I found that I was just yawning all the time. But over time, I became kind of habituated to the effects. I still yawn contagiously during social interactions, but seeing the stimuli that I use in the lab no longer produces the effect.
 
Skydiving salamanders

It is all about the video:


This really is controlled flight using all five limbs in a wind tunnel like that used by skydivers. They glide between old-growth redwood trees on the west coast of North America.

Paper Writeup

[EDIT]And did they really need the control in this case? We have discovered this salamander can fly, we had better check that not all salamander's can fly.
 
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‘Mind blowing’ ancient settlements uncovered in the Amazon

Mysterious mounds in the southwest corner of the Amazon Basin were once the site of ancient urban settlements, scientists have discovered. Using a remote-sensing technology to map the terrain from the air, a research team has revealed that, starting about 1,500 years ago, ancient Amazonians built and lived in densely populated centres, featuring 22-metre-tall earthen pyramids and encircled by kilometres of elevated roadways.

The complexity of these settlements is “mind blowing”, says Heiko Prümers, an archaeologist at the German Archaeological Institute headquartered in Berlin, and a member of the team.
“This is the first clear evidence that there were urban societies in this part of the Amazon Basin,” says Jonas Gregorio de Souza, an archaeologist at the University Pompeu Fabra in Barcelona, Spain. It adds to a growing body of research indicating that the Amazon — long thought to have been pristine wilderness before the arrival of Europeans — was home to advanced societies well beforehand. The discovery was published on 25 May in Nature.

Humans lived in the Amazon Basin — a vast river drainage system roughly the size of the continental United States — for around 9,500 years before the arrival of Europeans in the 16th century. Researchers thought that prior to the arrival of Europeans, all Amazonians lived in small, nomadic tribes that had little impact on the world around them. And while early European visitors described a landscape filled with towns and villages, later explorers were unable to find them.

By the 20th century, archaeologists had yet to confirm the rumours, and argued that the Amazon’s nutrient-poor soil was inadequate for supporting large-scale agriculture, and that it would have prevented tropical civilizations — like those found in Central and Southeast Asia — from materializing in the Amazon.

Previous digs had revealed that these “forest islands” contained traces of human habitation, including the remains of the mysterious Casarabe culture that appeared around AD 500. During one excavation, Prümers and his colleagues realized that they had found what appeared to be a wall, indicating that a permanent settlement had once occupied the site. The researchers also found grave sites, platforms and other indications of a complex society. But dense vegetation made it difficult for them to use conventional methods to survey the site.

By the 2010s, a technique called lidar — a remote-sensing technology that uses lasers to generate a 3-D image of the ground below — had come into vogue with archaeologists. In 2012, a lidar survey of a valley in Honduras helped lead to the rediscovery of an ancient pre-Columbian city rumoured to exist in the area. The jungle had completely overtaken the settlement since it was abandoned in the 15th century, making it all but impossible to see from the air without lidar.

Prümers and his colleagues took advantage of lidar in 2019 when they flew a helicopter equipped with the technology over six areas near sites confirmed to have been occupied by the Casarabe people. The team got more than it bargained for, with lidar revealing the size and shape of 26 settlements, including 11 the researchers hadn’t been looking for — a monumental task that would have taken 400 years to survey by conventional means, Prümers says.

Two of the urban centres each covered an area of more than 100 hectares on average — three times the size of Vatican City. The lidar images revealed walled compounds with broad terraces rising six metres above ground. On one end of the terraces stood conical pyramids made of earth. People likely lived in the areas around the terraces and travelled along the causeways connecting the sites to one another.
What it looks like to the eye:
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With LIDAR:
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Paper Writeup 1 Writeup 2
 
https://www.science.org/content/article/were-dinosaurs-warm-blooded-new-study-says-yes
Modern reptile blood runs cold, but modern bird blood is warm—so where do dinosaurs fit in? A new study of thigh bones from Plesiosaurus, Stegosaurus, Diplodocus, Allosaurus, and modern hummingbirds (illustrated above) posits that the extinct animals were warm blooded, CNN reports. Imaging the bones with infrared spectroscopy, scientists found an abundance of molecules produced as waste during oxygen inhalation, they report this week in Nature. The molecules are a sure sign of a high-powered metabolism, which warm-blooded animals use to keep their body temperatures constant, they say. Past hypotheses suggested dinos couldn’t survive fallout from the asteroid that hit Earth 66 million years ago because of their low metabolism; the new study argues this premise, the authors say.

mmhh....
 
It is a cool new way to make the call. John Ostrom and Bob Bakker began the debate convincingly 50 years ago.

Due in large part to his earlier research on hadrosaurs—and his conclusion that they were likely upright, terrestrial animals rather than sluggish, swamp-bound lizards—Ostrom was one of the first paleontologists to grasp the implications of the amount of energy it would take such large animals (and their still larger predators, such as Tyrannosaurus rex) to stand and move erect. At the first North American Paleontological Convention, held at the Chicago Field Museum in 1969, Ostrom spoke out against the accepted wisdom that Mesozoic climates were universally tropical and that such warm climates would be necessary to sustain large animals with lizard-like metabolisms. Ostrom supported this view by noting the correlation of erect posture and locomotion with high metabolism and body temperature in modern mammals and birds, stating that this relationship cannot be accidental.[13][12]

The observation that dinosaurs, thought to be uniformly cold-blooded at the time, could not be used as indicators of paleoclimate was further validated in 1973 with the discovery of hadrosaur fossils above the Cretaceous Canadian arctic circle by the Canadian paleontologist Dale Russell.[14] Ostrom's reappraisal of dinosaurs as endothermic was considered radical at the time, but its ability to resolve outstanding contradictions in dinosaur physiology immediately drew many followers, and would be supported by many future discoveries.[12]

Deinonychus[edit]
His 1964 discovery of additional Deinonychus fossils is considered one of the most important fossil finds in history.[15] Deinonychus was an active predator that clearly killed its prey by leaping and slashing or stabbing with its "terrible claw", the meaning of the animal's genus name. Evidence of a truly active lifestyle included long strings of muscle running along the tail, making it a stiff counterbalance for jumping and running. The conclusion that at least some dinosaurs had a high metabolism, and were thus in some cases warm-blooded, was popularized by his student Robert T. Bakker. This helped to change the impression of dinosaurs as the sluggish, slow, cold-blooded lizards which had prevailed since the turn of the century.

The implications of Deinonychus changed depictions of dinosaurs both by professional illustrators and as perceived by the public eye. The find is also credited with triggering the "dinosaur renaissance", a term coined in a 1975 issue of Scientific American by Bakker to describe the renewed debates causing an influx of interest in paleontology. The "renaissance" has lasted from the 1970s to the present and has doubled recorded dinosaur diversity.
I was teaching elementary school when that article came out and it turned my thinking on its head. Hot blooded dinos entered my classroom.

Noteworthy:
Bakker and his 1986 book are mentioned in the original Jurassic Park.[11] The bearded paleontologist Dr. Robert Burke, who is eaten by a Tyrannosaurus rex in Steven Spielberg's film The Lost World: Jurassic Park, is an affectionate caricature of Bakker. In real life, Bakker has argued for a predatory T. rex, while Bakker's rival paleontologist Jack Horner views it as primarily a scavenger. According to Horner, Spielberg wrote the character of Burke and had him killed by the T. rex as a favor for Horner. After the film came out, Bakker recognized himself in Burke, loved the caricature, and actually sent Horner a message saying, "See, I told you T. rex was a hunter!"[14]
 
https://medicalxpress.com/news/2022-05-cells-require-rest-maintenance.html

T cells need sleep

In the new study, Yale researchers show that a protein known as CD8a—which is found in a subset of T cells called CD8 cells—is crucial to keeping the cells in this dormant state. When scientists deleted this protein in mice, the protective CD8 cells were unable to enter a quiescent state and died, leaving the host vulnerable to infections.

Further, they identified another protein, PILRa, that provides a biochemical signal to CD8a. By disrupting this protein pair, both "memory" CD8 cells—cells that previously had been exposed to pathogens—and naïve cells died because they lacked the ability to stay in a quiescent state."

I see a piss poor analogy with getting old and needing to wake up during the night to visit the bathroom
 
Fusion Power progress

Saint-Paul-lez-Durance, France — From a small hill in the southern French region of Provence, you can see two suns. One has been blazing for four-and-a-half billion years and is setting. The other is being built by thousands of human minds and hands, and is — far more slowly — rising. The last of the real sun’s evening rays cast a magical glow over the other — an enormous construction site that could solve the biggest existential crisis in human history. It is here, in the tiny commune of Saint-Paul-lez-Durance, that 35 countries have come together to try and master nuclear fusion, a process that occurs naturally in the sun — and all stars — but is painfully difficult to replicate on Earth. Fusion promises a virtually limitless form of energy that, unlike fossil fuels, emits zero greenhouse gases and, unlike the nuclear fission power used today, produces no long-life radioactive waste. Mastering it could literally save humanity from climate change, a crisis of our own making.

https://www.cnn.com/interactive/2022/05/world/iter-nuclear-fusion-climate-intl-cnnphotos/
 
"Because beta-carotene increased the risk of lung cancer for current smokers in two NIH-supported studies, our goal with AREDS2 was to create an equally effective supplement formula that could be used by anyone, whether or not they smoke,"

"These results confirmed that switching our formula from beta-carotene to lutein and zeaxanthin was the right choice," said Chew.

https://medicalxpress.com/news/2022-06-benefit-supplements-age-related-macular-degeneration.html

ok this is bizarre, not that lutein and zeaxanthin slows eye damage from aging. Beta-carotene increases the risk of lung cancer in smokers.
 
"Because beta-carotene increased the risk of lung cancer for current smokers in two NIH-supported studies, our goal with AREDS2 was to create an equally effective supplement formula that could be used by anyone, whether or not they smoke,"

"These results confirmed that switching our formula from beta-carotene to lutein and zeaxanthin was the right choice," said Chew.

https://medicalxpress.com/news/2022-06-benefit-supplements-age-related-macular-degeneration.html

ok this is bizarre, not that lutein and zeaxanthin slows eye damage from aging. Beta-carotene increases the risk of lung cancer in smokers.
That is really interesting, and it is a massive effect:

Findings In this epidemiologic follow-up study of the AREDS2 cohort of 3882 participants and 6351 eyes, 10-year follow-up results showed that development of lung cancer nearly doubled in participants assigned to beta carotene among former smokers but not those assigned to lutein/zeaxanthin. Lutein/zeaxanthin was associated with a reduction in the risk of progression to late AMD when compared with beta carotene.
Bloody closed source publishing, I cannot find the full paper and it is not obvious from the references were that is primarily reported.
 
https://medicalxpress.com/news/2022-06-obese-patients-diabetes.html

Findings, which show that a particular type of gut microbe leads to white adipose tissue containing macrophage cells—large cells that are part of the immune system—associated with insulin resistance, were published in the Journal of Experimental Medicine.

In the human body, white adipose tissue is the main type of fat.

"Our experiments and analysis predict that a high-fat/high-sugar diet primarily acts in white adipose tissue by driving microbiota-related damage to the energy synthesis process, leading to systemic insulin resistance," said Morgun, associate professor of pharmaceutical sciences in the OSU College of Pharmacy. "Treatments that modify a patient's microbiota in ways that target insulin resistance in adipose tissue macrophage cells could be a new therapeutic strategy for type 2 diabetes."
 
NYT

“I believe this is the first time this has happened in the history of cancer,” Diaz said.

Dr. Alan P. Venook, a colorectal cancer specialist at the University of California, San Francisco, who was not involved with the study, said he also thought this was a first.

A complete remission in every single patient is “unheard-of,” he said.

These rectal cancer patients had faced grueling treatments — chemotherapy, radiation and, most likely, life-altering surgery that could result in bowel, urinary and sexual dysfunction. Some would need colostomy bags.

They entered the study thinking that, when it was over, they would have to undergo those procedures because no one really expected their tumors to disappear.

But they got a surprise: No further treatment was necessary.

“There were a lot of happy tears,” said Dr. Andrea Cercek, an oncologist at Memorial Sloan Kettering Cancer Center and a co-author of the paper, which was presented Sunday at the annual meeting of the American Society of Clinical Oncology.

Another surprise, Venook added, was that none of the patients had clinically significant complications.

On average, 1 in 5 patients have some sort of adverse reaction to drugs like the one the patients took, dostarlimab, known as checkpoint inhibitors. The medication was given every three weeks for six months and cost about $11,000 per dose. It unmasks cancer cells, allowing the immune system to identify and destroy them.
 
$88,000 is not a cheap cure. Certainly promising though. I would think that insurance would cover it since that price is likely less that other treatments.
 
These monoclonal antibodies are eye wateringly expensive. I wonder where the money goes. I cannot believe it is manufacture costs, and am not convinced it represents the development costs.
 
These monoclonal antibodies are eye wateringly expensive. I wonder where the money goes. I cannot believe it is manufacture costs, and am not convinced it represents the development costs.
One shot gene therapy drugs can cost $500,000 but that price includes both pre in fusion and several years of post infusion follow up.
 
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