Launcher gives you an issue due to UAC (claim ownership of the civilization folder, and it shouldn't cause an issue).
They were moved into a module because they are frankly unbalanced, poorly implemented, and in serious need of a redo. Once done, they'll be moved back into the core files.
Thanks I must have forgotten about ownership, because the owner was still my old, now deleted account.

Its working now, but I still get this error in module manager before and after I commit changes:
Length cannot be less than zero.
Parameter name:length.
System.ArgumentOutOfRangeException: Length cannot be less than zero.
Parameter name: length
at System.String.InternalSubStringWithChecks(Int32 startIndex, Int32 length, Boolean fAlwaysCopy)
at RifELauncher.FormModules.CheckConflicts()
at RifELauncher.FormModules.backgroundWorker1_RunWorkerCompleted(Object sender, RunWorkerCompletedEventArgs e)
at System.ComponentModel.BackgroundWorker.OnRunWorkerCompleted(RunWorkerCompletedEventArgs e)
at System.ComponentModel.BackgroundWorker.AsyncOperationCompleted(Object arg)
Well if they are reimplemented, I'd reccomend cutting the upgrade costs in half, at the very least, because I have to put most of my money into that and I was still having +10 who were still tier 1 or 2 because I couldn't afford to upgrade all of them from Jotnar citizens(or maybe have a mechanic to upgrade them in the city with the appropriate buildings, wait 5 turns, and only have to pay one quarter of normal upgrade costs or something).