Newsworthy Science

I could not get my head around this. Are they saying that all protons contain charm quarks, or that it is one of those uncertainty things, in that we cannot say there are exactly zero charm quarks in protons so they sometimes have one?

Just from reading the top sentence I think it's saying that there are (or rather, there is evidence of, seems less definitive than "there are") 4 quarks rather than 3 in every proton. Skimming through the text I think that is the correct interpretation.
 
Tea is good for you!!!

Actually tea drinking is associated with a >10% reduction in the chance of dying. This is significant, it is a bigger effect than many lifestyle influences, but correlation does not equal causation and there are good reasons to suspect that tea drinking could be otherwise associated with good health. For example tea drinking could be a "middle class" thing to do, and being middle class is quite good for your life expectancy. I do not have access to the full paper, and the abstract does not describe any fancy stats that may allow us to assign causality. However, tea is good, mkay?

Results:​

During a median follow-up of 11.2 years, higher tea intake was modestly associated with lower all-cause mortality risk among those who drank 2 or more cups per day. Relative to no tea drinking, the hazard ratios (95% CIs) for participants drinking 1 or fewer, 2 to 3, 4 to 5, 6 to 7, 8 to 9, and 10 or more cups per day were 0.95 (95% CI, 0.91 to 1.00), 0.87 (CI, 0.84 to 0.91), 0.88 (CI, 0.84 to 0.91), 0.88 (CI, 0.84 to 0.92), 0.91 (CI, 0.86 to 0.97), and 0.89 (CI, 0.84 to 0.95), respectively. Inverse associations were seen for mortality from all CVD, ischemic heart disease, and stroke. Findings were similar regardless of whether participants also drank coffee or not or of genetic score for caffeine metabolism.

Conclusion:​

Higher tea intake was associated with lower mortality risk among those drinking 2 or more cups per day, regardless of genetic variation in caffeine metabolism. These findings suggest that tea, even at higher levels of intake, can be part of a healthy diet.

For comparison, I found this paper from February that looked at similar (or even the same?) data and came up with these graphs for different drinks:

Spoiler Mortality by what you drink :
urn:cambridge.org:id:binary:20220225040514086-0640:S000711452200040X:S000711452200040X_fig1.png

urn:cambridge.org:id:binary:20220225040514086-0640:S000711452200040X:S000711452200040X_fig4.png

urn:cambridge.org:id:binary:20220225040514086-0640:S000711452200040X:S000711452200040X_fig3.png

 
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for the first half of my adult life I drank tea. For the second, coffee. Both in moderate amounts.
 
Are plants conscious?

Calvo and his colleague Miguel Segundo-Ortin at Utrecht University in the Netherlands have identified three crucial factors that provide a litmus test [for consciousness]. First, cognitive behaviour is flexible and dynamic, rather than being a repeated, knee-jerk reflex. Second, it is predictive: it indicates that the organism is anticipating changes in the environment. Finally, it is goal-directed: it causes a change in the environment or in the organism.​
Under this lens, we can see that a bee orchid tricking a male bee is just passively using the bee-catfishing equipment that has been honed through its evolutionary history. No cognition is needed. But a bean plant climbing up a pole? That might be a different story, says Calvo.​
When beans search for a support, they make broad, circular sweeps of their surroundings, growing as they go. As they home in on a pole, some beans will suddenly lunge towards it like a drunken pub-goer taking a swing at someone. It is a rapid, directed change in behaviour. This suggests the plant isn’t simply running a pre-programmed pole-seeking sequence. “It might even indicate that the bean ‘knows’ the pole is there,” says Calvo. We need to know a lot more before we can be sure, however, he adds, and “we must be very careful not to assume too much”.​
At the Minimal Intelligence Laboratory (MINT Lab) at the University of Murcia, he and his colleagues take a more high-tech approach. Climbing beans are the star in their time-lapse photography set-ups. The researchers use images taken every minute to capture a plant’s movements while monitoring its internal electrical signalling activity using electrodes and biosensors. These sequences have revealed how beans find supports: one particular plant in the lab lunges for the pole so rapidly that Calvo calls it Usain Bolt. The experiments also show that these behaviours are accompanied by spikes in electrical activity.​
This kind of electrical signalling hints at a level of sentience throughout the whole tree of life, says Calvo.​
Sentience is the capacity to experience sensations and feelings. The notion that all life possesses it, to a greater or lesser degree, is gaining ground. “Why stop at plants? Bacteria, fungi and slime moulds all do very clever things despite being more rudimentary,” says evolutionary ecologist Ariel Novoplansky at Ben-Gurion University of the Negev, Israel.​
The idea that sentience is mediated through electrical activity is generally acknowledged, given how our own brain and nervous system work. Plants don’t have brains, but they produce a lot of electrical activity in their vascular tissues, the main transport system for moving nutrients and water around them, which extends from roots to leaves. They also use many of the signalling molecules seen in animals, such as GABA, acetylcholine and serotonin. So, while certainly not conclusive, these similarities do suggest that plants have the underlying architecture to support sentience.​
But Calvo goes further. He believes that the flexible way in which plants grow, influenced by their surroundings and sensory information, indicates that they have unique, subjective experiences. This, together with the electrical signalling, hints that plants possess something that might be thought of as a sort of consciousness.​
That may sound absurd, but it fits with a leading conception of consciousness called integrated information theory. In essence, this sees consciousness as the ability to integrate multiple aspects of experience into a whole, irrespective of the system, whether it be a brain, a computer chip – or a plant. The more integration, the greater the level of consciousness.​
The MINT Lab team hopes to throw some light on how plants process information by adapting tools used to visualise activity in human brains. Purpose-built plant MRI or PET scanners would allow the researchers to map changes inside plant vascular systems and see what they are doing in real time. The primary method currently used to assess levels of consciousness in humans and other mammals is called “zap and zip”. It uses magnetic fields to excite electrically conductive cells and then looks at the resulting activity – the complexity of the pattern giving a relative measure of consciousness. Calvo and his colleagues have suggested that a version of zap and zip adapted for plants might help reveal whether their patterns of electrical activity underlie some kind of sentient experience.​
While the MINT Lab is looking at electrical signalling, other plant behaviourists are taking different approaches. These include exploring the possibility that plants have personalities (see “Plant personality“) and looking at how plants learn and remember. A team led by Monica Gagliano at Southern Cross University in Australia, for example, grew pea plants in Y-shaped mazes to see if they could be trained to grow towards a breeze, which seedlings would never do in the wild. When the researchers coupled airflow from a fan with a source of light, they found that the plants learned to grow towards the breeze even when the airflow was presented by itself – much as Pavlov’s dogs learned to associate the sound of a bell with the imminent arrival of food. Although Calvo’s team and others have been unable to replicate these findings, he doesn’t see this as conclusive evidence that plants can’t learn, just that it is difficult to probe the psychology of plants experimentally.​
Some are more sceptical. Last year, Jon Mallatt at Washington State University and his colleagues argued that even if plants are capable of Pavlovian learning, the finding is irrelevant because it doesn’t require consciousness. Their paper, titled “Debunking a myth: plant consciousness”, also concluded that the electrical signalling in plants gives no indication of consciousness. “Complex information processing requires reciprocal signalling between cells,” says Mallatt. “But no cellular back talk has yet been found in plants, only one-way signals.”​
Other critics see the idea of plant consciousness as little more than semantics. “There is neither evidence nor any scientific requirement for calling these coordinated reactions ‘cognition’ in plants,” says Andreas Draguhn at Heidelberg University in Germany. Mike Blatt at the University of Glasgow, UK, has a similar view. “It’s an interesting philosophical question, but not a very useful one for understanding plants, as everything they do can be explained physiologically,” he says.​
Some researchers are open to the idea that plants have basic sentience, but have some reservations about going beyond that based on current evidence. “We know plants are aware of their environment and of themselves and each other. We don’t know if they are conscious,” says Elizabeth Van Volkenburgh at the University of Washington. She suggests that philosophers and plant biologists should collaborate to agree a protocol to test the capabilities of plants.​

Main article (hard paywalled)
Interview with researcher (hard paywalled)
Debunking a myth: plant consciousness

Spoiler Main article, much repeated above :
MANY people have seen the way a Mimosa pudica plant, also called the touch-me-not, folds its leaves when they are touched. Fewer know that if you put one into a sealed chamber with a dose of anaesthetic, it will eventually stop doing this, as though it has been knocked out or put to sleep.

The anaesthetic needn’t be special. Diethyl ether, an old-school general anaesthetic, works well. Lidocaine, a local anaesthetic favoured by dentists, is also effective when applied at the roots. What’s more, if you attach electrodes to the surface of the leaves at the same time, you will see that the waves of electrical activity that usually spread through the plant’s tissues are suppressed. These effects aren’t confined to Mimosa pudica – all plants are probably susceptible to anaesthesia, it is just that the effects are more dramatic in fast movers like Mimosa plants and Venus flytraps.

Paco Calvo at the University of Murcia in Spain has done this trick several times in front of audiences. It never fails to surprise onlookers, prompting them to ask the very questions he himself is trying to answer. If plants can be “put to sleep”, does this mean they exist in a state of awareness that is shut off by anaesthetics? Might we consider this state to be a kind of sentience, a subjective internal experience? If so, do plants have some form of consciousness? These are controversial ideas, but Calvo and a small group of plant behaviour researchers take them seriously. Their findings so far, though tentative, could disrupt our understanding of consciousness – not to mention our attitudes towards plants.

Plants operate in ways that are difficult for us to perceive, so people have traditionally assumed they aren’t doing very much. But more recently, researchers have found them to possess many sophisticated and surprising abilities. Plants can sense and react to more aspects of their environments than we can, and they maintain bustling social lives by communicating with each other above and below ground. They also interact with other species. Tomato plants, for example, release chemicals that encourage their caterpillar predators to indulge cannibalistic instincts and turn on each other. Bee orchids trick male bees into landing on their flowers by looking and smelling like exotic female bees, then load the duped insects with pollen. Evening primroses can “hear” their pollinators and fire up nectar production when exposed to their specific vibration frequencies. Arabidopsis plants can use the unique wavelength profiles of light reflected off nearby plants to tell relatives from non-relatives.

Some of these capabilities are evolved stock responses to particular situations – simple, hardwired reactions. Other behaviours, though, might be underpinned by some form of cognition. Distinguishing between the two in plants can be tricky. Nevertheless, Calvo and his colleague Miguel Segundo-Ortin at Utrecht University in the Netherlands have identified three crucial factors that provide a litmus test. First, cognitive behaviour is flexible and dynamic, rather than being a repeated, knee-jerk reflex. Second, it is predictive: it indicates that the organism is anticipating changes in the environment. Finally, it is goal-directed: it causes a change in the environment or in the organism.

Under this lens, we can see that a bee orchid tricking a male bee is just passively using the bee-catfishing equipment that has been honed through its evolutionary history. No cognition is needed. But a bean plant climbing up a pole? That might be a different story, says Calvo.

When beans search for a support, they make broad, circular sweeps of their surroundings, growing as they go. As they home in on a pole, some beans will suddenly lunge towards it like a drunken pub-goer taking a swing at someone. It is a rapid, directed change in behaviour. This suggests the plant isn’t simply running a pre-programmed pole-seeking sequence. “It might even indicate that the bean ‘knows’ the pole is there,” says Calvo. We need to know a lot more before we can be sure, however, he adds, and “we must be very careful not to assume too much”.

Calvo believes that the first step in exploring the interior lives of plants is to look closely at their behaviour. He has spent many hours simply sitting and watching his favourite common bean plants (Phaseolus vulgaris) grow. “One way to tune in to plants is to slow down and get closer to their different timescales,” he says.

At the Minimal Intelligence Laboratory (MINT Lab) at the University of Murcia, he and his colleagues take a more high-tech approach. Climbing beans are the star in their time-lapse photography set-ups. The researchers use images taken every minute to capture a plant’s movements while monitoring its internal electrical signalling activity using electrodes and biosensors. These sequences have revealed how beans find supports: one particular plant in the lab lunges for the pole so rapidly that Calvo calls it Usain Bolt. The experiments also show that these behaviours are accompanied by spikes in electrical activity.

This kind of electrical signalling hints at a level of sentience throughout the whole tree of life, says Calvo.

Sentience is the capacity to experience sensations and feelings. The notion that all life possesses it, to a greater or lesser degree, is gaining ground. “Why stop at plants? Bacteria, fungi and slime moulds all do very clever things despite being more rudimentary,” says evolutionary ecologist Ariel Novoplansky at Ben-Gurion University of the Negev, Israel.

The idea that sentience is mediated through electrical activity is generally acknowledged, given how our own brain and nervous system work. Plants don’t have brains, but they produce a lot of electrical activity in their vascular tissues, the main transport system for moving nutrients and water around them, which extends from roots to leaves. They also use many of the signalling molecules seen in animals, such as GABA, acetylcholine and serotonin. So, while certainly not conclusive, these similarities do suggest that plants have the underlying architecture to support sentience.

But Calvo goes further. He believes that the flexible way in which plants grow, influenced by their surroundings and sensory information, indicates that they have unique, subjective experiences. This, together with the electrical signalling, hints that plants possess something that might be thought of as a sort of consciousness.

That may sound absurd, but it fits with a leading conception of consciousness called integrated information theory. In essence, this sees consciousness as the ability to integrate multiple aspects of experience into a whole, irrespective of the system, whether it be a brain, a computer chip – or a plant. The more integration, the greater the level of consciousness.

Can plants learn?

The MINT Lab team hopes to throw some light on how plants process information by adapting tools used to visualise activity in human brains. Purpose-built plant MRI or PET scanners would allow the researchers to map changes inside plant vascular systems and see what they are doing in real time. The primary method currently used to assess levels of consciousness in humans and other mammals is called “zap and zip”. It uses magnetic fields to excite electrically conductive cells and then looks at the resulting activity – the complexity of the pattern giving a relative measure of consciousness. Calvo and his colleagues have suggested that a version of zap and zip adapted for plants might help reveal whether their patterns of electrical activity underlie some kind of sentient experience.

While the MINT Lab is looking at electrical signalling, other plant behaviourists are taking different approaches. These include exploring the possibility that plants have personalities (see “Plant personality“) and looking at how plants learn and remember. A team led by Monica Gagliano at Southern Cross University in Australia, for example, grew pea plants in Y-shaped mazes to see if they could be trained to grow towards a breeze, which seedlings would never do in the wild. When the researchers coupled airflow from a fan with a source of light, they found that the plants learned to grow towards the breeze even when the airflow was presented by itself – much as Pavlov’s dogs learned to associate the sound of a bell with the imminent arrival of food. Although Calvo’s team and others have been unable to replicate these findings, he doesn’t see this as conclusive evidence that plants can’t learn, just that it is difficult to probe the psychology of plants experimentally.

Some are more sceptical. Last year, Jon Mallatt at Washington State University and his colleagues argued that even if plants are capable of Pavlovian learning, the finding is irrelevant because it doesn’t require consciousness. Their paper, titled “Debunking a myth: plant consciousness”, also concluded that the electrical signalling in plants gives no indication of consciousness. “Complex information processing requires reciprocal signalling between cells,” says Mallatt. “But no cellular back talk has yet been found in plants, only one-way signals.”

Other critics see the idea of plant consciousness as little more than semantics. “There is neither evidence nor any scientific requirement for calling these coordinated reactions ‘cognition’ in plants,” says Andreas Draguhn at Heidelberg University in Germany. Mike Blatt at the University of Glasgow, UK, has a similar view. “It’s an interesting philosophical question, but not a very useful one for understanding plants, as everything they do can be explained physiologically,” he says.

Some researchers are open to the idea that plants have basic sentience, but have some reservations about going beyond that based on current evidence. “We know plants are aware of their environment and of themselves and each other. We don’t know if they are conscious,” says Elizabeth Van Volkenburgh at the University of Washington. She suggests that philosophers and plant biologists should collaborate to agree a protocol to test the capabilities of plants.

Calvo welcomes these critiques. “Scientific rigour is founded on healthy scepticism,” he says. And he is adamant that his team has made no unfounded claims. “We are focused on carefully understanding plant behaviour and working out experimentally just how much cognition and sentient capacity we need to explain it,” he says.

Nobody doubts that we are a long way from understanding how plants experience the world. But where might research into plant cognition take us? Aside from motivating us to take better care of our houseplants, we might come to a new understanding of thought without neurons, and consciousness without a brain. At present, ideas about how our own minds operate focus almost exclusively on neural anatomy – we might need to rethink that. If the awareness at the centre of our conscious experience is something we share with all other living things, even plants, we might question whether humans are quite as special as we like to think.

Seeing things from the perspective of plants offers exciting practical possibilities too. Robotic designs inspired by plants have potential uses in space exploration and medicine (see “Plant-inspired robots“). Calvo is currently working with a Swiss company called Vivent using biosensors and machine learning to develop systems that detect plant stress and adjust their growing conditions in real time. Such systems could revolutionise farming and help ensure future food security. They might enable us to work with plants to face the challenges of the future, rather than regarding them as passive resources.

Perhaps we will also re-evaluate our ethical attitudes to plants, just as we are doing with non-human animals. “If plants have some degree of sentience, can we justify our treatment of them in agriculture, logging and all the other ways we exploit them?” says Calvo.

All of this could stem from a radically different perspective on plants. First, though, we must work out how to see them clearly.

Plant personality

Could plants have personalities? This may seem far-fetched given that the idea of personality in non-human animals is still contested. Nevertheless, there is some research suggesting that individual plants have different and consistent behavioural tendencies, which could be the result of both genetic hardwiring and behavioural flexibility. Mimosa pudica plants, for example, can be bolder or more cautious in how long they keep their leaves folded in response to being touched. One study found that a significant part of the difference between the plants was down to individual disposition.

On a broader scale, plants that have been domesticated tend to be less canny and independent than their wild relatives. Wild vines, for example, can scour their surroundings for something to climb and rapidly scale up it. In contrast, domesticated vines flounder unless they have trellises or poles placed next to them. You might think of them as the pampered lapdogs of the plant world. “We have selected for docility, as we have with domestic animals,” says Paco Calvo at the University of Murcia in Spain.

Occasionally, domesticated plants break out – they go feral. “They don’t reverse the genetic changes of domestication, but they behave like tough guys,” says Calvo. They start to grow in patterns similar to wild plants. Calvo argues that if individual plants have different personalities, it suggests that they have some kind of unique subjective awareness, some level of sentience (see main story).

Plant-inspired robots

Plants interact with space in entirely different ways than animals do. We have to traverse terrain, whereas they grow through space. Taking a plant’s perspective on movement is helping engineers develop new soft robots – machines made with malleable materials.

These plant-inspired robots are a little like giant, extruded balloons that expand outwards, growing like a bean stem exploring its surroundings. They could have many uses. They could navigate difficult terrains where traditional robots would flounder, such as the surface of Mars, and they can squeeze into tight spaces. They could even be used in brain surgery, entering the brain through its ventricles for delicate procedures.


Spoiler Interview :
MONICA GAGLIANO was diving on Australia’s Great Barrier Reef one day in 2008 when she had an epiphany. She was carrying out ecological experiments on reef fish that required her to kill them afterwards to harvest tissue samples. The fish had been swimming in and out of her hands for weeks. But that day they seemed to be hiding – almost as if they knew.

It was the moment at which Gagliano decided not only never to kill another animal for scientific purposes, but also to devote her research time to the sentience of other life forms. That led her to plants. Since no models existed for studying their behaviour, she applied her existing knowledge. “I looked at them as if they were my animals,” says Gagliano, who is due to take up a post at the University of Sydney this year. The approach has revealed that plants have a surprising range of abilities – and Gagliano is convinced she will discover more.

People often think plants don’t do much. Are they wrong?


The main reason we don’t appreciate them is that they operate at a different pace. It isn’t just a slower pace. Some plants are too fast for us, like the ones that explode to fire out their seeds. Plants also have a different way of manoeuvring in the environment. Animals move from A to B, but plants grow from A to B. They need to detect as much as possible beforehand to avoid growing in the wrong place, so they have very fine-tuned senses. The more we have looked, the more we have realised that they have a suite of behaviours.

What kinds of abilities do they have?

One that might come as a surprise is their acoustic abilities. Plenty of organisms have mechanoreceptors that respond to mechanical forces, and we now know plants have one that can pick up vibrations. Some can even “hear” the vibrations of a caterpillar munching their leaves and strike back by emitting repellent chemicals.


You say plants can learn. Why do you think that?

My idea was to take something that plants might consider a threat and see whether they could learn not to bother about it. Mimosa was a good plant to use because it quickly folds up its leaves when it feels threatened. I created a set-up that allowed me to drop a mimosa from about 15 centimetres high. It sounds terrible! But it actually wasn’t. I put it in a pot and it would slide down a bar onto some foam.

The first couple of times, the plant was like, “What’s happening?” It closed up its leaves. Usually with animals we need to do lots of repetitions before they learn what’s going on. So I was quite surprised that some of my plants started reopening their leaves after two to six drops.

How did other researchers react when you said that plants are good learners?

Plant biologists told me that I’m using the wrong words. But “learning” is exactly what I mean. Whether it is an animal, a plant or bacteria, if it ticks the boxes that we agree define learning, then that is what it is doing.

Does this go beyond the most basic learning?

The next level up is Pavlovian learning. In the famous example of Pavlov’s dogs, the dog learns that the bell always comes before dinner. I tried it with pea plants. The plant’s “dinner” was light and the “bell” was a little fan. I tested the fan first and the plant couldn’t care less about it. It was a meaningless cue, just as the bell was for the dog.

I put the peas in Y-shaped chambers that, once the plants have grown to a certain height, forced them to grow either left or right. I let the fan blow down one arm of the chamber then followed it with light. I did the same for two more days, each day changing the side the fan and light came from.

On the fourth day, I turned on the fan, but not the light. The instinctual response would be for the plant to grow towards the side where light was the day before; plants are good at remembering where they saw light. But would it learn to go against its instinct and follow the fan, which is a precursor of where the light is going to be? That is exactly what the peas did.

How could you tell that plants weren’t just choosing randomly which way to go?

Around 60 per cent of the peas grew towards the fan on the fourth day. That might appear not much more than random, but normally plants always go towards where they saw light last – not just sometimes, 100 per cent of the time. So, if 60 per cent go the other way, that is a high proportion.

You used the word “remember”. Are you saying plants have memories?

Memory is intrinsic to learning. And by the way, the pea wasn’t the first to show that plants have memory. In the mimosa drop experiment, I left my plants for almost a month and then went back to repeat the experiment. The plants responded exactly as if the last drop had been 5 minutes before.

If plants have memories, where are they stored?

The neat thing about plants, and the thing that makes them challenging for us to understand, is that they are totally decentralised. That means memories won’t be in a specific place like the leaves or the roots. The plant functions as a total brain, if we want to put it that way.

Our memories are stored in the brain, in patterns of electrochemical activity. Plants are masters of electrochemical signalling. A lot of electricity and a lot of chemical signals are running through plants. They have the same kind of channels that power our own cells’ electrical signalling and very similar chemicals are involved.

“Plant memories are decentralised – the whole plant is a total brain”

Could we ever see such signals?

If this were an animal, we would challenge it with a task and monitor what is occurring at the electrochemical level. We can plug a human into a machine and see how brain activity changes when they view happy or sad pictures, for example. I am planning to try something similar in plants soon.

Why have we been so slow to appreciate plant abilities?

We assume that humans are the golden template: anything that operates as we do gets a big tick. But that assumption is proving quite bad for the environment. It is also a hypothesis that doesn’t hold because the evidence is showing that the brain isn’t the only thing to produce learning. Plants are revealing that.
 
Almost half of cancer deaths are preventable

Nearly 50% of cancer deaths worldwide are caused by preventable risk factors, such as smoking and drinking alcohol, according to the largest study of the link between cancer burden and risk factors.​
Using estimates of cancer cases and deaths from more than 200 countries, researchers found that avoidable risk factors were responsible for nearly 4.5 million cancer deaths in 2019 (see ‘Global cancer deaths’). That represents more than 44% of global cancer deaths that year. Smoking, alcohol use and a high body-mass index (BMI) — which can be indicative of obesity — were the biggest contributors to cancer.​
The true number of cancer cases and deaths worldwide is hard to pin down, because some countries do not record such data, says study co-lead author Justin Lang, an epidemiologist at the Public Health Agency of Canada in Ottawa. To overcome this, Lang and his colleagues used data from a study looking at death and disability from more than 350 diseases and injuries in 204 countries. From those data, they estimated the impact of 34 risk factors on poor health and deaths from 23 types of cancer.​
In 2019, half of all male deaths from cancer, and more than one-third in women, were due to preventable risk factors including tobacco and alcohol use, unhealthy diets, unsafe sex and workplace exposure to harmful products, such as asbestos. From 2010 to 2019, global cancer deaths caused by these risk factors increased by about 20%, with excess weight accounting for the largest percentage of increase — particularly in lower income nations.​
The study did not include some other known risk factors for cancer, including exposure to ultraviolet (UV) radiation and certain infections. Although the researchers used ‘unsafe sex’ as a proxy for cancer risks associated with human papillomavirus (HPV) and other sexually transmitted viruses. Cervical cancer, which is caused by certain strains of HPV, is the leading cause of cancer deaths among women in sub-Saharan Africa. There, Kaaks says, “a huge part of cancer incidence and mortality in women could be decreased by timely HPV vaccination”.​

Writeup Paper

gr1.jpg


Top images men, bottom women.

Spoiler Legend :
Cancer DALYs attributable to 11 Level 2 risk factors globally in 2019
(A) Absolute cancer DALYs for males. (B) Proportional cancer DALYs for males. (C) Absolute cancer DALYs for females. (D) Proportional cancer DALYs for females. Air pollution includes ambient particulate matter pollution and household air pollution from solid fuels. Other environmental risks include residential radon. Occupational risks include exposure to 13 specific carcinogens. Dietary risks include nine specific risk factors relevant to cancer. Tobacco includes smoking, chewing tobacco, and second-hand smoke. See appendix (pp 157–60) for details and definitions of each Level 2 risk factor on the y-axis. See appendix (p 161) for further details about global absolute and proportional cancer deaths attributable to Level 2 risk factors. DALYs=disability-adjusted life-years.
 
Ocean ‘garbage patch’ is filled with fishing gear from just a few places

We talked in a thread a while ago about the claims made in the film Seaspiracy about the harm fishing does, mostly about plastic pollution. We wondered if the claims were really credible, such as the waste from fishing making the fuss over plastic straws irrelevant. A study has just come out that seems to justify his claims.

The subtropical oceanic gyre in the North Pacific Ocean is currently covered with tens of thousands of tonnes of floating plastic debris, dispersed over millions of square kilometres. A large fraction is composed of fishing nets and ropes while the rest is mostly composed of hard plastic objects and fragments, sometimes carrying evidence on their origin. In 2019, an oceanographic mission conducted in the area, retrieved over 6000 hard plastic debris items > 5 cm. The debris was later sorted, counted, weighed, and analysed for evidence of origin and age. Our results, complemented with numerical model simulations and findings from a previous oceanographic mission, revealed that a majority of the floating material stems from fishing activities. While recent assessments for plastic inputs into the ocean point to coastal developing economies and rivers as major contributors into oceanic plastic pollution, here we show that most floating plastics in the North Pacific subtropical gyre can be traced back to five industrialised fishing nations, highlighting the important role the fishing industry plays in the solution to this global issue.​

Writeup Paper

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Spoiler Type and time :
41598_2022_16529_Fig2_HTML.png

Spoiler Legend :
Composition of hard plastic debris harvested from the North Pacific Garbage Patch in 2019. Relative (a) mass and (b) numerical distribution of hard plastic items > 5 cm only (e.g., excluding nets and ropes).




41598_2022_16529_Fig3_HTML.png


Spoiler Legend :
Distribution of production date labels identified on plastic objects collected from the North Pacific Garbage Patch in 20153 (n = 50) and in 2019 (this study, n = 39). See Supplementary Table S8 for joint values with identified countries of origin identified for this study. Dots represent relative distribution of global plastic production per decade 51. Note that global production for the years 2016–2019 was estimated by extrapolating the exponential production increase as observed during the years 1980–2015 (see Supplementary Fig. S2, Supplementary Table S11).



A referenced paper has some interesting pictures: Production, use, and fate of all plastics ever made

As of 2015, approximately 6300 Mt of plastic waste had been generated, around 9% of which had been recycled, 12% was incinerated, and 79% was accumulated in landfills or the natural environment. If current production and waste management trends continue, roughly 12,000 Mt of plastic waste will be in landfills or in the natural environment by 2050.​

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Female hunters of the early Americas

I had previously without much thought accepted the hypothesis that "hunter gatherer societies" were mostly "Men do the hunting, women do the gathering", along with the evolutionary explanations for the sexual dimorphism we see today that come from this. A study (a couple of years old now) has questioned this assumption, finding that nearly half (11/27) of all burials found with hunting tools in the americas were female.

Sexual division of labor with females as gatherers and males as hunters is a major empirical regularity of hunter-gatherer ethnography, suggesting an ancestral behavioral pattern. We present an archeological discovery and meta-analysis that challenge the man-the-hunter hypothesis. Excavations at the Andean highland site of Wilamaya Patjxa reveal a 9000-year-old human burial (WMP6) associated with a hunting toolkit of stone projectile points and animal processing tools. Osteological, proteomic, and isotopic analyses indicate that this early hunter was a young adult female who subsisted on terrestrial plants and animals. Analysis of Late Pleistocene and Early Holocene burial practices throughout the Americas situate WMP6 as the earliest and most secure hunter burial in a sample that includes 10 other females in statistical parity with early male hunter burials. The findings are consistent with nongendered labor practices in which early hunter-gatherer females were big-game hunters.​

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How to beat the bookies

TL,DR: Look at all the odds, if one is offering significantly better odds than the others take the bet. But do it and the bookies will ban you.

Beating the bookies with their own numbers - and how the online sports betting market is rigged​
The online sports gambling industry employs teams of data analysts to build forecast models that turn the odds at sports games in their favour. While several betting strategies have been proposed to beat bookmakers, from expert prediction models and arbitrage strategies to odds bias exploitation, their returns have been inconsistent and it remains to be shown that a betting strategy can outperform the online sports betting market. We designed a strategy to beat football bookmakers with their own numbers. Instead of building a forecasting model to compete with bookmakers predictions, we exploited the probability information implicit in the odds publicly available in the marketplace to find bets with mispriced odds. Our strategy proved profitable in a 10-year historical simulation using closing odds, a 6-month historical simulation using minute to minute odds, and a 5-month period during which we staked real money with the bookmakers (we made code, data and models publicly available). Our results demonstrate that the football betting market is inefficient - bookmakers can be consistently beaten across thousands of games in both simulated environments and real-life betting. We provide a detailed description of our betting experience to illustrate how the sports gambling industry compensates these market inefficiencies with discriminatory practices against successful clients.​
 
If it worked, I certainly wouldn't tell anyone.

I'd be sipping my favourite tipple on a tropical island somewhere.
 
Single amino acid change could have made the difference between human and Neanderthal and ape brains

Neanderthal brains were similar in size to those of modern humans but differed in shape. What we cannot tell from fossils is how Neanderthal brains might have differed in function or organization of brain layers such as the neocortex. Pinson et al. have now analyzed the effect of a single amino acid change in the transketolase-like 1 (TKTL1) protein on production of basal radial glia, the workhorses that generate much of the neocortex (see the Perspective by Malgrange and Nguyen). Modern humans differ from apes and Neanderthals by this single amino acid change. When placed in organoids or overexpressed in nonhuman brains, the human variant of TKTL1 drove more generation of neuroprogenitors than did the archaic variant. The authors suggest that the modern human has more neocortex to work with than the ancient Neanderthal did.​
Paper Perspective

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Spoiler Legend :
A single Lys-to-Arg substitution in transketolase-like protein 1 (TKTL1) in modern humans (hTKTL1) compared with Neanderthal (aTKTL1) alters the metabolism of basal radial glial cells (bRGs). Expression of the hTKTL1 variant increases the number of bRGs and the upper cortical layer neuronal population. This is thought to contribute to the increased cognition of modern humans.
 
I saw that in a news item. Very interesting. Will give tons and tons of opportunities to make experiments with animals and organoids, which will tells us again tons about human evolution. Exciting!
 
Culture wars in Australia

Forget the right wing, it is sulphur-crested cockatoos that are the real enemy

Residents of Sydney, Australia, are caught in a battle of wits with cockatoos, as they try to stop the crafty birds raiding their rubbish bins for food.​
As fast as they come up with new ways to stop the sulphur-crested cockatoos (Cacatua galerita) from opening the bins, the birds are working out ways to defeat them. It is a classic example of an arms race in cultural evolution, says Barbara Klump at the Max Planck Institute of Animal Behavior in Radolfzell, Germany.​
The saga began when cockatoos discovered that people’s bins often contain food, with bread and fruit being particular favourites. The lids are heavy, but a few birds found they could pry them open at the front, grip the lid in their beak while walking around the rim towards the hinge, and flip the lid over.​
The trick was seen in only three suburbs of Sydney in 2018, but by 2019 it had spread to 44 suburbs as cockatoos learned the trick by copying each other, Klump’s team reported previously. The behaviour is a nuisance for residents since the birds often toss rubbish over their front yards and streets.​
The team has continued studying this culture war – this time focusing on the human side of the conflict.​
The researchers observed the protection strategies being used on 3283 bins in four suburbs where bin-raiding by cockatoos had been reported, and gathered responses from 1134 residents in an online survey.​
Some residents started putting bricks and other items on top of their bin lids, but some of the hungry birds figured out they could nudge the bricks off with their heads.​
Once it was thought that only humans have culture, in terms of innovations that spread between groups, but examples have now been seen in several animals, such as chimpanzees, whales and even insects. “We know that a lot of animals are similar to us in the way they learn [from each other] and have their own local traditions,” says Klump.​

Paper Writeup

 

World's oldest heart found in prehistoric fish​

Researchers have discovered a 380-million-year-old heart preserved inside a fossilised prehistoric fish.
They say the specimen captures a key moment in the evolution of the blood-pumping organ found in all back-boned animals, including humans.
The heart belonged to a fish known as the Gogo, which is now extinct.
The "jaw-dropping" discovery, published in the journal Science, was made in Western Australia.
The lead scientist, Prof Kate Trinajstic from Curtin University in Perth told BBC News about the moment she and her colleagues realised that they had made the biggest discovery of their lives.
"We were crowded around the computer and recognised that we had a heart and pretty much couldn't believe it! It was incredibly exciting," she said.

Usually, it is bones rather than soft tissues that are turned into fossils - but at this location in Kimberley, known as the Gogo rock formation - minerals have preserved many of the fish's internal organs, including the liver, stomach, intestine and heart.
"This is a crucial moment in our own evolution," said Prof Trinajstic.
"It shows the body plan that we have evolved very early on, and we see this for the very first time in these fossils."
Her collaborator, Prof John Long from Flinders University in Adelaide, described the find as "a mind-boggling, jaw-dropping discovery".
"We have never known anything about the soft organs of animals this old, until now," he said.

The Gogo fish is the first of a class of prehistoric fish called placoderms. These were the first fish to have jaws and teeth. Before them, fishes were no bigger than 30cm, but placoderms could grow up to nine metres in length.
Placoderms were the planet's dominant life form for 60 million years, existing more than 100 million years before the first dinosaurs walked the Earth.
Scans of the Gogo fish fossil showed that its heart was more complex than expected for these primitive fish. It had two chambers one on top of each other, similar in structure to the human heart.
The researchers suggest this made the animal's heart more efficient and was the critical step that transformed it from a slow-moving fish to a fast-moving predator.

"This was the way they could up the ante and become a voracious predator," said Prof Long.
The other important observation was that the heart was much more forward in the body than those of more primitive fish.
This position is thought to have been associated with the development of the Gogo fish's neck and made space for the development of lungs further down the evolutionary line.

Dr Zerina Johanson of the Natural History Museum, London, who is a world leader in placoderms, and is independent of Prof Trinajstic's team, described the research as an "extremely important discovery" that helps to explain why the human body is the way it is today.
"A lot of the things you see we still have in our own bodies; jaws and teeth, for example. We have the first appearance of the front fins and the fins at the back, which eventually evolved into our arms and legs.
"There are many things going on in these placoderms that we see evolving to ourselves today such as the neck, the shape and arrangement of the heart and its position in the body."
The discovery fills in an important step in the evolution of life on Earth, according to Dr Martin Brazeau, a placoderm expert at Imperial College London, who is also independent of the Australian research team.
"It's really exciting to see this result," he told BBC News.
"The fishes that my colleagues and I are studying are part of our evolution. This is part of the evolution of humans and other animals that live on land and the fishes that live in the sea today."
https://www.bbc.com/news/science-environment-62912225
 
Who’d a Thunk It: Bad News Makes People Sad
Social science has outdone itself with this finding. What can we possibly learn next?

EVERY ONCE IN A WHILE we stumble upon a piece of information that completely changes the way we think about the world. This is what happened to me when I heard about a study conducted at Texas Tech University proving that exposing oneself to a steady diet of bad news can lead to unhappiness and depression and even make a person physically ill. Needless to say, this revelation totally floored me. Like most people, I’d always assumed that gorging on a steady diet of horrific news about wars, famine, floods and disease was a surefire way to cheer yourself up, that devouring bad news would put a little spring in your step and a song in your heart.

Boy, was I ever wrong! When a group of three academics from the College of Media and Communication at Texas Tech examined 1,100 online posts about the public’s relationship to the media, they found that people addicted to checking the news not only suffered from greater stress and anxiety than the rest of us but could even get sick from watching the news. Like, sick to their stomachs. Yes, what the courageously counterintuitive findings published in the peer-reviewed journal Health Communications seem to be suggesting is that if you keep checking your phone to see how the Chicago Cubs or the New York Jets are doing today, or if you constantly go online to stay abreast of how the polar ice caps are faring, or if you keep turning on the television to find out if the Russians have improved their behavior, it will not make you happier, it will not make you healthier, and it will not make it any easier to get out of bed in the morning.

As Bryan McLaughlin, the associate professor of advertising who co-authored the watershed study, puts it: “Witnessing these events unfold in the news can bring about a constant state of high alert in some people, kicking their surveillance motives into overdrive and making the world seem like a dark and dangerous place.” A dark and dangerous place? This world? Well, who’d a thunk it? On a personal note, this iconoclastic study of self-destructive news junkies has single-handedly restored my faith in the social sciences. For the longest time I’ve been one of those mean-spirited curmudgeons— an outcast at life’s rich feast—who looks down his nose at social scientists, ridiculing their work as off-base, poorly reasoned or just plain wrong. Either that or complaining that they are always using complicated charts and graphs to tell us stuff we already know.

Now I’ve done a complete 360 on the profession. These days I can’t wait to see what other jaw-dropping news these hell-for-leather trend spotters will come up with. For example, I am anxiously looking forward to a rigorously scientific, data-driven, peer-reviewed study proving that 30 consecutive days of torrential heat makes people wish that autumn would come early. Of equal interest would be a study proving once and for all that getting fired from your job on Christmas Eve will not make you very popular with your kids. I’m also looking forward to studies proving that a surprisingly large number of people find leaf blowers annoying, that regularly slamming away a large quantity of devil dogs and triple- bacon cheeseburgers could eventually lead to weight problems, and that getting stuck in traffic jams on I-95 can cause stress. Follow-up studies would check to see if this was also true on Route 405 in Los Angeles and on the George Washington Bridge. The smart money says yes.

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NATHAN HACKETT


Finally, I would love to see a study where researchers prove beyond a shadow of a doubt that a good man is hard to find, that rainy days and Mondays always get you down, that people generally don’t miss their water till their well runs dry, and that nothing succeeds like success. Nothing.

MOVING TARGETS
JOE QUEENAN
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I could not get my head around this. Are they saying that all protons contain charm quarks, or that it is one of those uncertainty things, in that we cannot say there are exactly zero charm quarks in protons so they sometimes have one?

Just from reading the top sentence I think it's saying that there are (or rather, there is evidence of, seems less definitive than "there are") 4 quarks rather than 3 in every proton. Skimming through the text I think that is the correct interpretation.

The top sentence of that article is simplified to such an amount that it is very misleading in this context. A proton has three valence quarks (two "up", one "down") - this composition is what makes it a proton and determines its properties. It also has an undefined number of sea quarks - quark and anti-quark pairs which are created and annihilated all the time. These are mostly up/anti-up and down/anti-down pairs, but also some strange/anti-strange and apparently also a tiny fraction of charm/anti-charm pairs. This is quantum mechanics, so all these possibilities are in superposition (when nobody is looking). This means that every proton has a tiny fraction of a charm quark inside. If you were able to "look" inside a proton, you would have a tiny chance of finding a charm quark inside.
 
The top sentence of that article is simplified to such an amount that it is very misleading in this context. A proton has three valence quarks (two "up", one "down") - this composition is what makes it a proton and determines its properties. It also has an undefined number of sea quarks - quark and anti-quark pairs which are created and annihilated all the time. These are mostly up/anti-up and down/anti-down pairs, but also some strange/anti-strange and apparently also a tiny fraction of charm/anti-charm pairs. This is quantum mechanics, so all these possibilities are in superposition (when nobody is looking). This means that every proton has a tiny fraction of a charm quark inside. If you were able to "look" inside a proton, you would have a tiny chance of finding a charm quark inside.

Science journalists lacking subject expertise? Shocking
 
This means that every proton has a tiny fraction of a charm quark inside. If you were able to "look" inside a proton, you would have a tiny chance of finding a charm quark inside.
A fraction of a Charm quark, so quarks can be divided? Or, just a chance that one might be present? Can both be true?
 
A fraction of a Charm quark, so quarks can be divided? Or, just a chance that one might be present? Can both be true?

A quark cannot be divided (well, as far as we know). This means that you would never detect the presence of half a quark or something like this. You would either detect it or you don't. So it is more like the chance that one might be present. However, the chance of something being present has an effect in quantum mechanics - in this case it contributes to the mass of the proton. So in some way it does have the effect of a fractional quark, even if such a thing does not exist.
 
@uppi I just got a new x10 power magnifying glass; I will look at one of my nearby protons and check it out for half quarks.
 
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