Yeah, it's larger and horizontal.
And guess what.. I'm on my new pc right now, finishing installing windows updates
The cpu cooler without the lower fan fit fine, but was a bit of a pain to install because I put in the video card in first so that I could see exactly which orientation would fit best. That didn't leave much room to see what the hell is going on below, but I'm stubborn so I kept at it (carefully), in the end having to take the video card out and cleaning all the thermal paste off both plates and starting again.
With the video card out the cpu cooler was easy enough to screw on.. I did some cable management adjustments, hooked up the ssd drive, which is attached behind the motherboard and I don't think that's the norm because the power cable that came with the modular power supply twisted in the wrong direction and caused some headaches there.. I might have to get new cables for that. Anyway though, I booted her up and she started up like a charm!
I monitored CPU temperature in the bios for 10 minutes or so before doing anything and it kept steady at 31-32C.. I had other stuff to do so I just let it sit there for a while and periodically checked what it was at. Memory is in dual channel mode.. everything else looked good, so I installed windows.
I've been sitting here installing drivers and updating everything, network and graphics drivers are up to date, windows 7 updates just finished and I have to reboot, I am going to have to download all drivers for the motherboard after that..
And I guess I'm good to go
Installed already is Europa Universalis IV, which didn't work on my laptop at all. I also plan on building a super giant rocket in kerbal space program and while I sleep I want to simulate my fm2012 save 100 years into the future to see if my ungrateful team ever names a stadium after me.
As you can see there is no way I am getting any sleep tonight. I should have updated the specs in the OP, but it is too late for that now. Post build pics coming soon.