Here is my save. Please note that I have edited the mod slightly for my preferences (playing as Sweden but with Denmark's leader and faction traits, as well as Spain's unique unit), so I hope you can still open/read the file.
The king has mostly been attacking from the Pacific (I only encountered one ship coming from the Atlantic, and I promptly sank it with my pirate fleet in the Caribbeans).
Using the Worldbuilder I have tried to locate the rest of the REF fleet and indeed I can see quite a few ships scattered, mostly in the Pacific but even a few below the equator in the Atlantic. They just sit there and don't seem to move from turn to turn. But as far as I can tell none of these ships are carrying troops...
The king has mostly been attacking from the Pacific (I only encountered one ship coming from the Atlantic, and I promptly sank it with my pirate fleet in the Caribbeans).
Using the Worldbuilder I have tried to locate the rest of the REF fleet and indeed I can see quite a few ships scattered, mostly in the Pacific but even a few below the equator in the Atlantic. They just sit there and don't seem to move from turn to turn. But as far as I can tell none of these ships are carrying troops...