Could you please post here the folder search path of SOE?
In the scenario properties of the editor, where you tell in what additional folders civ should look to find stuff?
I suspect it has nothing to do with a special root for conquest, but rather that it look first for the first entry in this path
so if it says "..\Conquest; ..\SOE", it will be faster if you put stuff in conquest rather than in SOE
However, if it says "..\SOE; ..\Conquest", then we should expect opposite results
In the scenario properties of the editor, where you tell in what additional folders civ should look to find stuff?
I suspect it has nothing to do with a special root for conquest, but rather that it look first for the first entry in this path
so if it says "..\Conquest; ..\SOE", it will be faster if you put stuff in conquest rather than in SOE
However, if it says "..\SOE; ..\Conquest", then we should expect opposite results